Dr. Jeff Denny's Home Page

Education

Research and Teaching Interests

• Mathematical molecular biophysics
• Mathematical modeling with differential equations
• Protein structure determination via solid-state NMR data
• Mathematics education

Software

• J. K. Denny, M. B. Daniel, and F. A. Kovacs, "Computing and Fitting SSNMR Powder Patterns with the Arithmetic-Geometric Mean and Edge Detection", Concepts in Magnetic Resonance, 30A(1); 1-20, 2007.
  
  The python program to find chemical shift principal values using the AGM and and edge detection heuristic algorithm can be found here.
  
  
• J. K. Denny and C. K. Trivett, "Cooling the Macon Volunteer Clinic", The UMAP Journal, 27(4): 431-447, 2006.
  
  The model in Berkeley Madonna can be found here and in XPPAUT code can be found here.

• Python code for computing a Latin hypercube sample for use in sensitivity and uncertainty analysis:
• lhs.py
• ranges.txt (text file for storing the ranges of the parameters)
• outfile.txt (sample output file)
  
  

E-mail comments to denny_jk@mercer.edu